Publikationen

2021

Begutachteter Zeitschriftenartikel

Regulatory dynamics of cell differentiation revealed by true time series from multinucleate single cells

Pretschner, Anna; Pabel, Sophie; Haas, Markus; Heiner, Monika; Marwan, Wolfgang

In: Frontiers in genetics - Lausanne: Frontiers Media, Bd. 11 (2021), insges. 17 S.

Begutachteter Zeitschriftenartikel

Quantifying 35 transcripts in a single tube - model-based calibration of the GeXP multiplex RT-PCR assay

Marquardt, Pauline; Werthmann, Britta; Rätzel, Viktoria; Haas, Markus; Marwan, Wolfgang

In: BMC biotechnology - London: BioMed Central, 2001, Bd. 21 (2021), insges. 15 S.

2020

Begutachteter Zeitschriftenartikel

Disentangling a complex response in cell reprogramming and probing the Waddington landscape by automatic construction of Petri nets

Rätzel, Viktoria; Werthmann, Britta; Haas, Markus; Strube, Jan; Marwan, Wolfgang

In: Biosystems: journal of biological and information processing sciences - Amsterdam [u.a.]: Elsevier Science, Volume 189 (2020), article 104092

2019

Begutachteter Zeitschriftenartikel

Disentangling a complex response in cell reprogramming and probing the waddington landscape by automatic construction of petri nets

Rätzel, Victoria; Werthmann, Britta; Haas, Markus; Strube, Jan; Marwan, Wolfgang

In: bioRxiv beta - Cold Spring Harbor: Cold Spring Harbor Laboratory, NY, 2013 . - 2019, S. 38

Dissertation

Biologische Variabilität bei der Musterbildung von 'Dictyostelium discoideum'

Hilgardt, Christiane; Marwan, Wolfgang

In: Magdeburg, Univ., Fak. für Naturwiss., Diss., 2010, X, 168 S., Ill., graph. Darst., 30 cm

2018

Dissertation

Modellbasiertes Metabolic Engineering zur Optimierung der Itaconatproduktion in Escherichia coli

Harder, Björn-Johannes; Marwan, Wolfgang

In: Aachen: Shaker Verlag, 2018, [1. Auflage], IX, 130 Seiten, Illustrationen, Diagramme, 21 cm, 203 g - (Forschungsberichte aus dem Max-Planck-Institut für Dynamik Komplexer Technischer Systeme; Band 52)

2017

Begutachteter Zeitschriftenartikel

Transcriptome reprogramming during developmental switching in Physarum polycephalum involves extensive remodeling of intracellular signaling networks

Glöckner, Gernot; Marwan, Wolfgang

In: Scientific reports - [London] : Macmillan Publishers Limited, part of Springer Nature, Vol. 7.2017, Art. 12304, insgesamt 12 S.

Begutachteter Zeitschriftenartikel

Developmental switching in Physarum polycephalum - Petri net analysis of single cell trajectories of gene expression indicates responsiveness and genetic plasticity of the Waddington quasipotential landscape

Werthmann, Britta; Marwan, Wolfgang

In: Journal of physics / D - Bristol: IOP Publ, Vol. 50.2017, 46, Art. 464003, insgesamt 18 S.

Dissertation

Bestimmung von Signalflüssen zwischen Faktoren der zellulären Differenzierungskontrolle - zeitabhängige Veränderung von Expressionsprofilen auf Einzelzellebene

Werthmann, Britta; Marwan, Wolfgang

In: Magdeburg, 2017, VIII, 147 Blätter, Illustrationen[Literaturverzeichnis: Blatt 140-146]

Dissertation

Biomodelkit - a framework for modular biomodel-engineering

Blätke, Mary-Ann; Marwan, Wolfgang

In: Magdeburg, Dissertation Otto-von-Guericke-Universität Magdeburg, Fakultät für Naturwissenschaften 2017, 190 Seiten, Illustrationen [Literaturverzeichnis: Seite [177]-188]

2016

Begutachteter Zeitschriftenartikel

The physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling

Schaap, Pauline; Barrantes, Israel; Minx, Pat; Sasaki, Narie; Anderson, Roger W.; Bénard, Marianne; Biggar, Kyle K.; Buchler, Nicolas E.; Bundschuh, Ralf; Chen, Xiao; Fronick, Catrina; Fulton, Lucinda; Golderer, Georg; Jahn, Niels; Knoop, Volker; Landweber, Laura F.; Maric, Chrystelle; Miller, Dennis; Noegel, Angelika A.; Peace, Rob; Pierron, Gérard; Sasaki, Taeko; Schallenberg-Rüdinger, Mareike; Schleicher, Michael; Singh, Reema; Spaller, Thomas; Storey, Kenneth B.; Suzuki, Takamasa; Tomlinson, Chad; Tyson, John J.; Warren, Wesley C.; Werner, Ernst R.; Werner-Felmayer, Gabriele; Wilson, Richard K.; Winckler, Thomas; Gott, Jonatha M.; Glöckner, Gernot; Marwan, Wolfgang

In: Genome biology and evolution: GBE - Oxford: Oxford Univ. Press, Bd. 8.2016, 1, S. 109-125

2015

Buchbeitrag

BioModel engineering with Petri nets

Blätke, Mary Ann; Heiner, Monika; Marwan, Wolfgang

In: Algebraic and discrete mathematical methods for modern biology - London, UK: Academic Press, S. 141-192, 2015

Begutachteter Zeitschriftenartikel

Gene expression kinetics in individual plasmodial cells reveal alternative programs of differential regulation during commitment and differentiation

Rätzel, Viktoria; Marwan, Wolfgang

In: Development, growth & differentiation: official journal of the Japanese Society of Developmental Biologists - Oxford [u.a.]: Wiley-Blackwell, Bd. 57.2015, 5, S. 408-420

Dissertation

Dynamische Fließgleichgewichte und ihre Übergänge in Reaktionsnetzwerken - experimenteller Nachweis der Quasi-potential-Landschaft der zellulären Reprogrammierung

Rätzel, Viktoria; Marwan, Wolfgang

In: Magdeburg, 2015, 146 Blätter, Illustrationen, 30 cm[Literaturverzeichnis: Seite 132-136]

Dissertation

Infection dynamics and virus-induced apoptosis in influenza virus A infected adherent and suspension MDCK cells

Peschel, Britta; Reichl, Udo; Marwan, Wolfgang

In: Zugl.: Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2015: Aachen: Shaker, VI, 180 S., Ill., graph. Darst., 21 cm, 291 g - (Forschungsberichte aus dem Max-Planck-Institut für Dynamik komplexer technischer Systeme; 44)

2014

Buchbeitrag

Integrating prior knowledge in automatic network reconstruction

Favre, Marie C. F.; Marwan, Wolfgang; Wagler, Annegret K.

In: CEUR workshop proceedings - Aachen, Germany: RWTH Aachen, 1995, Bd. 1159.2014, S. 45-59Kongress: International Workshop on Biological Processes & Petri Nets 5 (Tunis, Tunisia : 2014.06.23)

Buchbeitrag

A Petri-net-based framework for biomodel engineering

Blätke, Mary Ann; Rohr, Christian; Heiner, Monika; Marwan, Wolfgang

In: Large-Scale Networks in Engineering and Life Sciences - Cham : Birkhäuser , 2014, S. 317-366

Begutachteter Zeitschriftenartikel

EXACT2 - the semantics of biomedical protocols

Soldatova, Larisa N.; Nadis, Daniel; King, Ross D.; Basu, Piyali S.; Haddi, Emma; Baumlé, Véronique; Saunders, Nigel J.; Marwan, Wolfgang; Rudkin, Brian B.

In: BMC bioinformatics - London: BioMed Central, 2000, Vol. 15.2014, Suppl. 14, S. S5

Dissertation

The transcriptomic networks controlling the sporulation in Physarum polycephalum

Barrantes Bustinza, Walter Israel; Marwan, Wolfgang

In: Magdeburg Univ., Fak. für Naturwiss., Diss., 2015, 2014, XVI, 227 S., graph. Darst.

2013

Begutachteter Zeitschriftenartikel

JAK/STAT signalling - an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems and synthetic biology

Blätke, Mary Ann; Dittrich, Anna; Rohr, Christian; Heiner, Monika; Schaper, Fred; Marwan, Wolfgang

In: Molecular BioSystems - Cambridge: Royal Society of Chemistry, 2005, Bd. 9.2013, S. 1290-1307

Dissertation

Untersuchungen zum biotechnologischen Potenzial des fakultativ photosynthetischen Bakteriums Rhodospirillum rubrum und dessen Zentralstoffwechsel

Rudolf, Christiane; Marwan, Wolfgang

In: Magdeburg, Univ., Fak. für Naturwiss., Diss., 2013, XV, 233 S., graph. Darst.

Dissertation

Zellheterogenität am Beispiel der Expression des Escherichia coli lac Operons

Marbach, Anja; Marwan, Wolfgang

In: Magdeburg Univ., Fak. für Naturwiss., Diss., 2013, X, 126 S., Ill., graph. Darst., 30 cm

2012

Abstract

A database-supported modular modelling platform for systems and synthetic biology

Blätke, Mary Ann; Marwan, Wolfgang

In: Biological processes & Petri Nets, S. 18-19, 2012 - (CEUR workshop proceedings; 852)Kongress: International Workshop on Biological Processes & Petri Nets; 3 (Hamburg) : 2012.06.25

Buchbeitrag

JAK-STAT signalling as example for a database-supported modular modelling concept

Blätke, Mary Ann; Dittrich, Anna; Heiner, Monika; Schaper, Fred; Marwan, Wolfgang

In: Computational Methods in Systems Biology / Gilbert , David - Berlin, Heidelberg : Springer ; Gilbert, David . - 2012, S. 362-365 - (Lecture Notes in Bioinformatics; 7605) Kongress: CMSB 2012 10 London, UK 2012.10.03-05

Buchbeitrag

Predicting phenotype from genotype through automatically composed Petri nets

Blätke, Mary Ann; Heiner, Monika; Marwan, Wolfgang

In: Computational Methods in Systems Biology / Gilbert , David - Berlin, Heidelberg : Springer ; Gilbert, David . - 2012, S. 87-106 - (Lecture Notes in Bioinformatics; 7605) Kongress: CMSB 2012 10 London, UK 2012.10.03-05

Begutachteter Zeitschriftenartikel

JAK/STAT signalling - an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems- and synthetic biology

Blätke, Mary Ann; Dittrich, Anna; Rohr, Christian; Heiner, Monika; Schaper, Fred; Marwan, Wolfgang

In: De.arxiv.org. - [S.l.] : Arxiv.org, insges. 54 S., 2012

Begutachteter Zeitschriftenartikel

Reconstruction of extended Petri nets from time-series data by using logical control functions

Durzinsky, Markus; Marwan, Wolfgang; Wagler, Annegret

In: Journal of mathematical biology. - Berlin : Springer, insges. 21 S., 2012

Dissertation

Untersuchungen zur Redoxregulation der Photosynthesemembranexpression in dem fakultativ phototrophen Bakterium Rhodospirillum rubrum

Carius, Anke Berit; Marwan, Wolfgang

In: Magdeburg, Univ., Fak. für Naturwiss., Diss., 2012, III, 134 S., graph. Darst.

Originalartikel in begutachteter internationaler Zeitschrift

Futile attempts to differentiate provide molecular evidence for individual differences within a population of cells during cellular reprogramming

Hoffmann, Xenia-Katharina; Tesmer, Jens; Souquet, Manfred; Marwan, Wolfgang

In: FEMS microbiology letters. - Malden, Mass : Wiley-Blackwell, Bd. 329.2012, 1, S. 78-86

Nicht begutachteter Zeitschriftenartikel

A next-generation sequencing approach to study the transcriptomic changes during the differentiation of physarum at the single-cell level

Barrantes, Israel; Leipzig, Jeremy; Marwan, Wolfgang

In: Gene regulation and systems biology. - Auckland, NZ : Libertas Academica, 6, S. 127-137, 2012

2011

Dissertation

Understanding phototaxis of Halobacterium salinarum - a systems biology approach

Streif, Stefan; Findeisen, Rolf; Marwan, Wolfgang

In: Aachen: Shaker, Zugl.: Magdeburg, Univ., Fak. für Elektrotechnik und Informationstechnik., Diss., 2011, XIX, 165 S., Ill., graph. Darst., 21 cm - (Contributions in systems theory and automatic control; 1)

Originalartikel in begutachteter internationaler Zeitschrift

Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks

Marwan, Wolfgang; Wagler, Annegret; Weismantel, Robert

In: Natural computing: an international journal - Dordrecht [u.a.]: Kluwer Academic Press, Bd. 10.2011, 2, S. 639-654

Originalartikel in begutachteter internationaler Zeitschrift

Reconstruction of extended Petri nets from time series data and its application to signal transduction and to gene regulatory networks

Durzinsky, Markus; Wagler, Annegret; Marwan, Wolfgang

In: BMC systems biology - London: BioMed Central, Bd. 5.2011, 113, insges. 17 S.

Originalartikel in begutachteter internationaler Zeitschrift

Automatic network reconstruction using ASP

Durzinsky, Markus; Marwan, Wolfgang; Ostrowski, Max; Schaub, Torsten; Wagler, Annegret

In: Theory and practice of logic programming: TPLP - Cambridge: Cambridge Univ. Press, Bd. 11.2011, 4/5, S. 749-766[Special issue: 27th International Conference on Logic Programming, 2011]

Originalartikel in begutachteter internationaler Zeitschrift

The circuits of live

Marwan, Wolfgang

In: Public service review / Science and technology - Newcastle-under-Lyme: PSCA International, insges. 1 S., 2011

Originalartikel in begutachteter zeitschriftenartiger Reihe

Petri nets in Snoopy - a unifying framework for the graphical display, computational modelling, and simulation of bacterial regulatory networks in Methods in Molecular Biology

Marwan, Wolfgang; Rohr, Christian; Heiner, Monika

In: Bacterial molecular networks . - New York, NY [u.a.] : Humana Press, ISBN 978-1-617-79361-5, S. 409-437; Abstract

2010

Originalartikel in begutachteter internationaler Zeitschrift

A predictive computational model of the kinetic mechanism of stimulus-induced transducer methylation and feedback regulation through CheY in archaeal phototaxis and chemotaxis

Streif, Stefan; Oesterhelt, Dieter; Marwan, Wolfgang

In: BMC systems biology . - London : BioMed Central, Bd. 4.2010, 27, insges. 18 S.; Abstract

Originalartikel in begutachteter internationaler Zeitschrift

Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum

Barrantes, Israel; Glöckner, Gernot; Meyer, Sonja; Marwan, Wolfgang

In: BMC genomics . - London : BioMed Central, Abstract

Originalartikel in begutachteter internationaler Zeitschrift

Amoeba-inspired network design

Marwan, Wolfgang

In: Science . - Washington, DC : American Assoc. for the Advancement of Science, Bd. 327.2010, 5964, S. 419-420

Originalartikel in begutachteter internationaler Zeitschrift

Snoopy: a unifying Petri net framework to investigate biomolecular networks

Rohr, Christian; Marwan, Wolfgang; Heiner, Monika

In: Bioinformatics . - Oxford : Oxford Univ. Press, Bd. 26.2010, 7, S. 974-975

Originalartikel in begutachteter zeitschriftenartiger Reihe

Modular and hierarchical modelling concept for large biological Petri nets applied to nociception

Blätke, Mary Ann; Marwan, Wolfgang

In: Algorithmen und Werkzeuge: Proceedings of the 17th German Workshop on on Algorithms and Tools for Petri Nets, Cottbus, Germany, October 07-08, 2010 - Proceedings of the 17th German Workshop on on Algorithms and Tools for Petri Nets, Cottbus, Germany, October 07-08, 2010 , 2010 . - 2010, insges. 9 S.

2009

Originalartikel in begutachteter internationaler Zeitschrift

Quantitative analysis of signal transduction in motile and phototactic cells by computerized light stimulation and model based tracking

Streif, Stefan; Staudinger, Wilfried Franz; Oesterhelt, Dieter; Marwan, Wolfgang

In: Review of scientific instruments: RSI / publ. by the American Institute of Physics: RSI - Melville, NY: AIP, 80.2009, 2, Art. 023709, insges. 8 S.

Originalartikel in begutachteter zeitschriftenartiger Reihe

Extended stochastic Petri nets for model-based design of wetlab experiments

Heiner, Monika; Lehrack, Sebastian; Gilbert, David; Marwan, Wolfgang

In: Transactions on computational systems biology ; 11.2009 - Berlin [u.a.]: Springer, 2009 . - 2009, S. 138-163 - (Lecture notes in computer science; 5750; Lecture notes in bioinformatics; Journal subline)

2008

Originalartikel in begutachteter internationaler Zeitschrift

A first glimpse at the transcriptome of physarum polycephalum

Glöckner, Gernot; Golderer, Georg; Werner-Felmayer, Gabriele; Meyer, Sonja; Marwan, Wolfgang

In: BMC genomics . - London : BioMed Central, Bd. 9.2008, insges. 11 S.; Abstract

Originalartikel in begutachteter internationaler Zeitschrift

A mathematical approach to solve the network reconstruction problem

Marwan, Wolfgang; Wagler, Annegret; Weismantel, Robert

In: Mathematical methods of operations research . - Berlin : Springer, Bd. 67.2008, 1, S. 117-132

Originalartikel in begutachteter internationaler Zeitschrift

Automatic reconstruction of molecular and genetic networks from discrete time series data

Durzinsky, Markus; Wagler, Annegret; Weismantel, Robert; Marwan, Wolfgang

In: Biosystems . - Amsterdam : North-Holland Publ. Co., Bd. 93.2008, 3, S. 181-190

Originalartikel in begutachteter internationaler Zeitschrift

Flagellar rotation in the archaeon halobacterium salinarum depends on ATP

Streif, Stefan; Staudinger, Wilfried Franz; Marwan, Wolfgang; Oesterhelt, Dieter

In: Journal of molecular biology . - Amsterdam [u.a.] : Elsevier, Bd. 384.2008, 1, S. 1-8

2005

Begutachteter Zeitschriftenartikel

Reconstructing the regulatory network controlling commitment and sporulation in Physarum polycephalum based on hierarchical Petri Net modelling and simulation

Marwan, Wolfgang; Sujatha, Arumugam; Starostzik, Christine

In: Journal of theoretical biology - Amsterdam: Elsevier Ltd., 1961, Bd. 236.2005, 4, S. 349-365

Letzte Änderung: 08.06.2023 - Ansprechpartner: Webmaster